#!/bin/bash

#
# Copyright (c) Vladimir Likic 2005-2011
#

source RUN_PARAMETERS

echo -ne "   running 'align.sh'\n"
./align.sh > $OUTPUT_DIR/align.sh.out 2>&1

echo -ne "   running 'hmmbuild.sh'\n"
./hmmbuild.sh > $OUTPUT_DIR/hmmbuild.sh.out 2>&1

echo -ne "   running 'hmm-calibrate.sh'\n"
./hmm-calibrate.sh > $OUTPUT_DIR/hmm-calibrate.sh.out 2>&1

